Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
---|---|---|---|---|---|---|---|---|---|
KIRC | rs12219179 | chr10:33012030 | G/C | 3.23E-5 | 507 | 37.37 | 37.63 | 17.32 | KM Plot |
KIRC | rs12219725 | chr10:33030204 | A/G | 3.31E-6 | 506 | 37.37 | 37.63 | 7.33 | KM Plot |
KIRC | rs12283462 | chr11:71835406 | T/G | 0.000129 | 504 | 36.57 | 44.58 | 10.97 | KM Plot |
KIRC | rs12283472 | chr11:34949502 | G/A | 4.14E-13 | 509 | 37.7 | 26.17 | 3.48 | KM Plot |
KIRC | rs12284317 | chr11:105627346 | C/T | 0.000115 | 501 | 34.83 | 47.82 | 20.6 | KM Plot |
KIRC | rs12286538 | chr11:34963916 | A/G | 5.72E-6 | 507 | 37.77 | 26.07 | 3.67 | KM Plot |
KIRC | rs12289996 | chr11:34965407 | A/G | 7.74E-8 | 503 | 37.67 | 26.07 | 3.3 | KM Plot |
KIRC | rs12327120 | chr18:33276081 | A/G | 3.85E-5 | 501 | 38.05 | 29.1 | 7.37 | KM Plot |
KIRC | rs1234255 | chr19:37716693 | A/G | 7.41E-5 | 502 | 40 | 30.6 | 20 | KM Plot |
KIRC | rs1234258 | chr19:37718115 | C/T | 8.33E-5 | 505 | 40 | 30.6 | 20 | KM Plot |
KIRC | rs12418732 | chr11:1546194 | G/C | 8.08E-5 | 509 | 37.47 | 37.37 | 5.47 | KM Plot |
KIRC | rs12419457 | chr11:1545076 | C/G | 8.08E-5 | 509 | 37.47 | 37.37 | 5.47 | KM Plot |
KIRC | rs12436606 | chr14:44919017 | G/A | 0.000103 | 502 | 40.28 | 31.73 | 24.57 | KM Plot |
KIRC | rs12482343 | chr21:47604967 | G/A | 9.12E-5 | 495 | 37.67 | 31.3 | 3.33 | KM Plot |
KIRC | rs12482934 | chr21:47605335 | C/T | 7.45E-5 | 496 | 37.67 | 31.07 | 3.33 | KM Plot |